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A Comprehensive Review of In silico Analysis for Protein S-sulfenylation Sites

[ Vol. 25 , Issue. 9 ]

Author(s):

Md Mehedi Hasan*, Mst Shamima Khatun and Hiroyuki Kurata   Pages 815 - 821 ( 7 )

Abstract:


Background: Cysteine S-sulfenylation is a major type of dynamic post-translational modification of the protein that plays an important role in regulating many biological processes in both of prokaryotic and eukaryotic species. To understand the function of S-sulfenylated proteins, identification of S-sulfenylation sites is an essential step. Due to numerous restrictions of experimental methods, computational prediction of the potential S-sulfenylation sites becomes popular. In this review, we discuss the recent development and challenges in protein S-sulfenylation site prediction from the available datasets, algorithms and accessible services. We also demonstrate the encountered limitation and future perspective of the computational prediction tools.

Conclusion: The development of S-sulfenylation site prediction and their application is an emerging field of protein bioinformatics research. Accurate predictors are expected to identify general and species-specific S-sulfenylation sites when more experimental annotation data are available. Combining experimental and computational technologies will definitely accelerate an understanding of protein S-sulfenylation, discovering regulatory networks in living organisms.

Keywords:

S-sulfenylation site, statistical learning, feature representation, tool development, computational prediction tools, regulatory networks.

Affiliation:

Department of Bioscience and Bioinformatics, Kyushu Institute of Technology, 680-4 Kawazu, Iizuka, Fukuoka 820- 8502, Laboratory of Bioinformatics, Department of Statistics, University of Rajshahi, Rajshahi-6205, Department of Bioscience and Bioinformatics, Kyushu Institute of Technology, 680-4 Kawazu, Iizuka, Fukuoka 820- 8502

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